Hm, the uploaded image is sadly full of zeros! This is thresholded (_thresh)? So better check your thresholding since it looks like nothing is surviving.
Regards,
Dave
On 28 Sep 2011, at 16:22, Daniel Schwartz wrote:
> I do, uploaded. Thanks!!
>
> 269174
>
> -Daniel
> ________________________________________
> From: FSL - FMRIB's Software Library [[log in to unmask]] On Behalf Of Matthew Webster [[log in to unmask]]
> Sent: Wednesday, September 28, 2011 3:31 AM
> To: [log in to unmask]
> Subject: Re: [FSL] MELODIC error (SUSAN)
>
> Hello Daniel,
> Do you still have the prefiltered_func_data_thresh.nii.gz file? If you do can you upload it to:
>
> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>
> and let me know the 6-digit reference number?
>
> Many Regards
>
> Matthew
>
>> Things look good until:
>>
>> $ susan prefiltered_func_data_thresh 0.93138525 2.12314225053 3 1 1 mean_func 0.93138525 prefiltered_func_data_smooth
>> Segmentation fault (core dumped)
>>
>> I've got 64 GB of RAM, and it only uses 11 of them. I installed 4.1.8 today.
>>
>> After that fails, it throws an error... but then keeps going? The job is still at 90-100%, the report_log.html reports "STILL RUNNING..."
>>
>> What should I do?
>>
>> Thanks
>> -Daniel
>>
>
--
Dave Flitney, IT Manager
Oxford Centre for Functional MRI of the Brain
E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
URL: http://www.fmrib.ox.ac.uk/~flitney
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