Mark,
I got this to work with pixdim4 and toffset (setting each to 8 for a particular example), but then when I process the nii file that has the header set the way I want it, BET writes over the values and sets them back to their defaults (1 and 0) in the output brain.nii. Is this a feature or a bug, and can it be prevented? I hate to have to experiment with this using the other FSL tools.
-Jeff
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