It is my understanding that there is no "retracted" category in the
wwPDB. Models are "obsoleted", usually with a replacement but sometimes
without. I don't know of a way to distinguish between those models obsoleted
for gross error and those simply replaced by one of higher quality. Surely
this is a continuum.
In the current case, I've seen nothing to suggest that the diffraction
data is bad, although I've not looked at it hard, so the model's creator
could run a proper refinement and submit a replacement. This model is
so poor that I can't be sure, but I suspect that that model would be an
apo form and probably of little interest. This is a good case for an
"obsolete without replacement".
I should note that, while the paper has been retracted, I see no
indication that the entry 2QNS has been "obsoleted". Perhaps that update
is still in the pipeline.
Dale Tronrud
On 08/11/11 06:46, Garib N Murshudov wrote:
> Dear all
>
> Does anybody have the list (pdb as well as structure factors) of all
> retracted structures?
>
> regards
> Garib
>
> On 10 Aug 2011, at 22:01, David Schuller wrote:
>
>> Time to fuel up the gossip engines for the approaching weekend:
>>
>>
>> http://www.sciencedirect.com/science/article/pii/S096921260800186X
>>
>> RETRACTED: Structure of the Parathyroid Hormone Receptor C Terminus
>> Bound to the G-Protein Dimer Gβ_1 γ_2
>> Structure, Volume 16, Issue 7
>> <http://www.sciencedirect.com/science?_ob=PublicationURL&_tockey=%23TOC%236269%232008%23999839992%23693753%23FLA%23&_cdi=6269&_pubType=J&view=c&_auth=y&_acct=C000022719&_version=1&_urlVersion=0&_userid=492137&md5=9dc4b8953d3fa243dc98e395b6ac590d>,
>> 9 July 2008, Pages 1086-1094
>> Structure 2QNS withdrawn.
>> --
>> =======================================================================
>> All Things Serve the Beam
>> =======================================================================
>> David J. Schuller
>> modern man in a post-modern world
>> MacCHESS, Cornell University
>> [log in to unmask]
>
> Garib N Murshudov
> Structural Studies Division
> MRC Laboratory of Molecular Biology
> Hills Road
> Cambridge
> CB2 0QH UK
> Email: [log in to unmask]
> Web http://www.mrc-lmb.cam.ac.uk
>
>
>
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