PIR is fairly similar to Fasta, from addled memory the format is...
>protein name;
----empty line----
MPREIL...rest of amino acid sequence with an optional asterisk to mark the sequence end.
Tony
Sent from my iPhone
On 12 Aug 2011, at 09:14, "Phil Evans" <[log in to unmask]> wrote:
> Can anyone get this server to work? For me it keeps complaining that my sequence file is not a PIR file. The file looks OK to me, but I've never really understood what a PIR file is
>
> Phil
>
> On 12 Aug 2011, at 01:39, Kevin Jin wrote:
>
>>
>> Should we really have some crystallographers to review and qc those structures before the formal releasing? JCSG has set a very good mechanism for this issue.
>>
>> There is a sever for self check.
>>
>> http://smb.slac.stanford.edu/jcsg/QC/
>>
>>
>>
>>
>>
>>
>> On Thu, Aug 11, 2011 at 4:58 PM, Jacob Keller <[log in to unmask]> wrote:
>> I think they fudged the data in this paper...
>>
>> JPK
>>
>> On Thu, Aug 11, 2011 at 6:30 PM, David Schuller <[log in to unmask]> wrote:
>>> link: http://iai.asm.org/cgi/reprint/IAI.05661-11v1
>>>
>>> Ferric C. Fang & Arturo Casadevall
>>> Retracted Science and the Retraction Index
>>> Infec. Immun. doi:10.1128/IAI.05661-11
>>>
>>> Abstract: Articles may be retracted when their findings are no longer
>>> considered trustworthy due to scientific misconduct or error, they
>>> plagiarize previously published work, or are found to violate ethical
>>> guidelines. Using a novel measure that we call the “retraction index,” we
>>> found that the frequency of retraction varies among journals and shows a
>>> strong correlation with the journal impact factor.
>>> ...
>>>
>>> (with special attention to Figure 1, Retraction Index vs. Impact Factor)
>>>
>>>
>>> --
>>> =======================================================================
>>> All Things Serve the Beam
>>> =======================================================================
>>> David J. Schuller
>>> modern man in a post-modern world
>>> MacCHESS, Cornell University
>>> [log in to unmask]
>>>
>>
>>
>>
>> --
>> *******************************************
>> Jacob Pearson Keller
>> Northwestern University
>> Medical Scientist Training Program
>> cel: 773.608.9185
>> email: [log in to unmask]
>> *******************************************
>>
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