Hi all,
I ran a Feat analysis using BET in the pre-stats. Using BET in the pre-stats, statistical values (activations) is not calculated in non-brain tissues, for example in eyes. It's Ok, but why fsl uses the "non-brain-extracted example_func" for registration to a high-resolution structural image having non-brain structures already removed by Bet? Using high-resolution structural image having non-brain structures already removed by Bet in the registration is a recommendation, but I think it would be better if the "brain-extracted example_func" would be registered to this "brain-extracted high-resolution" scan.
Could anybody help me to understand this issue?
Thanks,
Gábor
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