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Subject:

AW: [SPM] Segmentation and Normalization

From:

"Finke, Carsten" <[log in to unmask]>

Reply-To:

Finke, Carsten

Date:

Tue, 12 Jul 2011 22:27:49 +0200

Content-Type:

text/plain

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Ok, so I think the mwxi.nii should be it.
best,
carsten

________________________________
Von: Pablo RipollÚs Vidal [[log in to unmask]]
Gesendet: Dienstag, 12. Juli 2011 19:40
An: Finke, Carsten
Cc: [log in to unmask]
Betreff: Re: [SPM] Segmentation and Normalization

Hi Carsten,
you are wellcome. I have never used that option, and I do not know how it works sorry. The mask needs to have a 0 for every voxel of the lesioned area and a 1 for every voxel outside the lesioned area. What I usually do is save the voi drowing as a nii file which gives you an image with 1 for voxels inside the lesion and 0 for voxels outside it. Then I use ImageCalc to do a 1 - i1.
Maybe there is a more direct and easy way to do this.
Best Regards,

2011/7/12 Carsten Finke <[log in to unmask]<mailto:[log in to unmask]>>
Hi Pablo,
I changed the bounding box and it works - many thanks for your help! And you're right, of course, it's the Crinion-paper. And thanks for the other reference (Andersen et al 2010). As I am drawing lesion masks anyway (in MRIcron), I will give it a try. Do you know whether I just can use the "Create SPM5 masks" option in MRIcron for masking the lesion in SPM8? It creates two files (mwxi.nii and lwxi.nii), I guess I have to use mwxi.nii?

carsten

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