Thank you the script did run. But it could not list the names of the different structures. The output file got created inspite of the following error. I am not sure if this is why the structures names could not be generated.
autoaq.sh: line 106:36992 Trace/BPT trap ${FSLDIR}/bin/atlasquery -a "${ATLAS}" -m tmp_${RNDSTR}_${cstr} >> ${OUT}
dyld: Library not loaded: @executable_path/../Frameworks/libqt-mt.3.dylib
Referenced from: /Applications/FSL/fsl/bin/atlasquery
Reason: image not found
Can you please throw some light on this?
Thank you.
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