Hi Saad,
Thank you for the response and information. I have checked the merged_* files and the correct number of slices are present but this check prompted one other follow-up question: Should the number of volumes be different from the input data? There are 50 volumes contained within each merged_ file but 61 volumes in the input file. My assumption is that this is not an issue but wanted to confirm. Thank you again for your assistance.
Best,
Michael
_____________________
Michael R. Borich, DPT, PhD
Postdoctoral Research Fellow
Brain Behavior Laboratory
University of British Columbia
212-2177 Wesbrook Mall
Vancouver, BC V6T 1Z3
phone: 604-827-3369
fax: 604-822-1870
________________________________________
From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Saad Jbabdi [[log in to unmask]]
Sent: Tuesday, July 12, 2011 10:10 AM
To: [log in to unmask]
Subject: Re: [FSL] Error message when using bedpostx
You can safely ignore this error message, which is related to a monitoring process that is running in the background.
A safe way to check if everything went fine is to compare the number of slices in the merged_* files to that of the input data.
You can also look at the error logs in the log sub-directory.
Saad.
On 12 Jul 2011, at 17:28, Michael Borich wrote:
> Hello all,
>
> I am receiving the following error message when running bedpostx:
>
> Errors: /usr/local/fsl/bin/bedpostx: line 250: kill: (13188) - no such process
>
> This appears to happen near the completion of the routine as all output files are created and the files do not appear to be corrupted when running simple probtrackx analyses afterwards. Does anyone have an idea what could be causing this error? Also, is there a reliable way to check the output files to determine if they can be used despite receiving this error message? Thanks!
>
> Best,
> Michael
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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