Hi Steve,
I understood the help output of featquery sucht that if no leading
slash is supplied, featquery will look inside the *.feat directories
for the mask (i.e., relative path). However, I also tried masks
located in the directory I ran featquery from and also tried absolute
paths, to no avail. I will give it another shot, but if that doesn't
work either, I'd be thankful if you could have a look at the data.
Thanks a lot,
Cornelius
On Sat, Jul 16, 2011 at 10:12 AM, Stephen Smith <[log in to unmask]> wrote:
> Hi Cornelius - are you sure that reg_standard/mask exists relative to the
> directory you are calling featquery from?
> If you're still stuck, feel free to upload the output featquery directory
> (and a copy of what appears in your terminal when you run it) and email us
> the upload ID and we can take a look.
> Cheers.
>
>
>
> On 15 Jul 2011, at 14:31, Cornelius Werner wrote:
>
> Dear list,
>
> I tried to overcome my previously posted problem by running featquery
> from the command line. But every time I try to run it against FNIRT#ed
> feat directories, it fails. FLIRT'ed ones do not seem to pose a
> problem. However, I really need the FNIRT ones...
>
> This is the call:
> featquery 16 /path-to-data/7511_TTT4-7.feat
> /path-to-data/7441_TTT4-7.feat /path-to-data/7519_TTT4-7.feat
> /path-to-data/7442_TTT4-7.feat /path-to-data/7520_TTT4-7.feat
> /path-to-data/7486_TTT4-7.feat /path-to-data/7521_TTT4-7.feat
> /path-to-data/7487_TTT4-7.feat /path-to-data/7488_TTT4-7.feat
> /path-to-data/7576_TTT4-7.feat /path-to-data/7507_TTT4-7.feat
> /path-to-data/7577_TTT4-7.feat /path-to-data/7718_TTT4-7.feat
> /path-to-data/7508_TTT4-7.feat /path-to-data/7510_TTT4-7.feat
> /path-to-data/7719_TTT4-7.feat 6 stats/pe5 stats/pe7 stats/pe13
> stats/pe15 stats/pe21 stats/pe23 acc_46-75-60 reg_standard/mask -vox
> 46 75 60
>
> And this is the error:
>
> expected floating-point number but got "Mask"
> while executing
> "format %.4g [ lindex $thevals 0 ] "
> ("for" body line 243)
> invoked from within
> "for { set f 1 } { $f <= $featquery(multiple) } { incr f 1 } {
>
> #{{{ setup output dir and logging etc.
>
> set mask $origmask
>
> cd [ lindex $argv $f ]
> ..."
> (file "/usr/lib/fsl/4.1/featquery" line 167)
>
> It does not seem to depend on the actual mask I am using. It crashes
> with all masks tried so far.
> Thanks in advance and best regards,
> Cornelius
> --
> Dr. med. Cornelius J. Werner
> Department of Neurology
> RWTH Aachen University
> Pauwelsstr. 30
> 52074 Aachen
> Germany
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
>
>
--
Dr. med. Cornelius J. Werner
Department of Neurology
RWTH Aachen University
Pauwelsstr. 30
52074 Aachen
Germany
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