yes, thank you, 'overlay' does a better job of creating the basic image i wish to display.
but what i am trying to accomplish in the 'slicer' command is to display the basic image (just created by 'overlay') with the outline of a the hippocampus stamped on top. the 'slicer' command allows for a 2nd input volume whose edges are stamped on top of the first volume. this is exactly what i wish to do.
unfortunately, i do not see this edge. can you recommend how i might achieve this? the commands i am using are:
overlay 1 0 MNI152_T1_2mm_brain -a cope1 0.241417 3.307448 /tmp/overlay_cope_over_mni
slicer overlay_cope_over_mni hippocampus_left -s 2 -L -e 0.5 -x -50 sliceX_050.png -x -51 sliceX_051.png -x
thanks,
- bettyann
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