Hi,
What file is this? generate.out, generate_template.out?? It looks like
there is something wrong with your setswap_list.tbl and/or methyls.tbl
in the begin dir. Are these present? if not add them in, using files
from the dir i sent you. If they are present they need to match your
protein. You could try regenerating them using in a fresh run using just
your protein sequence. Copy and paste the files across to the dir you
were working in
Chris
Piotr Wysoczanski wrote:
> Hi,
>
> Could you possibly help me with the error below, that ARIA/CNS gives me. Any suggestions are appreciated.
>
> CNSsolve>
> CNSsolve> evaluate ($swap = 1.0)
> EVALUATE: symbol $SWAP set to 1.00000 (real)
> CNSsolve> inline @RUN:protocols/swap.cns
> ASSFIL: file swap.cns opened.
> CNSsolve>!$Revision: 1.1.1.1 $
> CNSsolve>!$Date: 2010/03/23 15:27:16 $
> CNSsolve>!$RCSfile: swap.cns,v $
> CNSsolve>
> CNSsolve>
> CNSsolve>REMARK protocols/swap.cns
> CNSsolve>REMARK swaps systematically randomly selected methylene protons
> CNSsolve>REMARK accepts the conformation with lower noe energy
> CNSsolve>REMARK can be used in conjunction with floating assignment
> CNSsolve>REMARK uses the ARIA FLIP command
> CNSsolve>
> CNSsolve>! **********************************************
> CNSsolve>! * Author and copyright: Michael Nilges, EMBL *
> CNSsolve>! * No warranty implied or expressed *
> CNSsolve>! * All rights reserved *
> CNSsolve>! **********************************************
> CNSsolve>
> CNSsolve>
> CNSsolve>set echo off message off end
> %SELRPN-ERR: selection has to end with a ")":
> do (q = q * ran()) (attr q > -0.5)
> ^^^
> %CNSsolve-ERR: unrecognized command:
> do (q = q * ran()) (attr q > -0.5)
> ^^^
> %CNSsolve-ERR: unrecognized command:
> do (q = q * ran()) (attr q > -0.5)
> ^
> %SELRPN-ERR: selection has to end with a ")":
> for $id in id ((attr store9=1) and name h*2 and attr q < $swap and attr q > -0.5)
> ^^^
> %CNSsolve-ERR: LOOP expected:
> for $id in id ((attr store9=1) and name h*2 and attr q < $swap and attr q > -0.5)
> ^^^
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
>
> ... and so on till infinity...
>
> Kind regards,
>
> Piotrek
>
|