Try saving the batch job as a MATLAB .m file to see where the
differences are. Your own script seems to miss out a number of the
fields that are needed.
On 25 March 2011 13:14, Gael Varoquaux <[log in to unmask]> wrote:
> On Fri, Mar 25, 2011 at 11:41:52AM +0000, John Ashburner wrote:
>> If you check the initial alignment of the images using Check Reg, are
>> they almost aligned?
> They are indeed.
>> If the relative displacement or rotation is too large, then there could
>> be instabilities.
> Absolutely, I understand that. Why leaves me puzzle is that fact that it
> works from the GUI and fails from the script. Both behaviors are very
> reproducible. I am trying to understand where the difference comes from.