Dear SPMers,
I was running VBM8 using 3 modules ("VBM8: Estimate & Write" + "Run DARTEL (create Templates)" + "Create Warped"), but it crashed soon after the 2nd module (for which I set dependencies on rp* affine images) started.
So, I wonder whether (1) I can continue from the 2nd module ("Run DARTEL (create Templates)") by specifying the "rp*_affine.nii" images created from the 1st module or (2) I should restart from the 1st module ("VBM8: Estimate & Write").
It seems that option (1) is OK according to the manual, so I'm trying that. However, the figures in Matlab command window looks bigger now. To give you an idea, I copy and paste below the first 10 items appearing in the windows in the two attempts.
***"Run DARTEL (create Templates)" (dependencies were set on "rp* affine images" from "VBM8: Estimate & Write")***
Running 'Run DARTEL (create Templates)'
26581.8, 1354.55, 379.462, 76.3297, 46.7796, 45.9059, 49.6178, 56.437,
1 1 -3.57E+06 0 -3.57E+06 691.912
1 2 -3.57E+06 0 -3.57E+06 679.625
1 3 -3.57E+06 0 -3.57E+06 670.363
1 4 -3.53E+06 0 -3.53E+06 667.06
1 5 -3.57E+06 0 -3.57E+06 648.72
1 6 -3.58E+06 0 -3.58E+06 685.663
1 7 -3.55E+06 0 -3.55E+06 709.962
1 8 -3.56E+06 0 -3.56E+06 690.238
1 9 -3.61E+06 0 -3.61E+06 674.046
1 10 -3.56E+06 0 -3.56E+06 683.842
***"Run DARTEL (create Templates)" ("rp*_affine.nii" images have been specified)***
28046.3, 1571.81, 430.622, 83.2556, 50.3391, 49.2398, 53.8236, 60.7589,
1 1 -4.06E+06 139220 -3.92E+06 1075.86
1 2 -4.11E+06 141825 -3.97E+06 1130.76
1 3 -4.01E+06 122437 -3.89E+06 1075.1
1 4 -4.24E+06 123914 -4.11E+06 1028.2
1 5 -4.04E+06 113308 -3.93E+06 979.584
1 6 -4.06E+06 140711 -3.92E+06 1049.41
1 7 -4.22E+06 135924 -4.08E+06 1057.83
1 8 -4.21E+06 123227 -4.09E+06 1059.7
1 9 -4.26E+06 151157 -4.11E+06 1127.17
1 10 -4.00E+06 156632 -3.85E+06 1217.79
As you can see, the numbers tend to be bigger when I have directly specified "rp*_affine.nii" images compared to when I set dependencies.
So, could anyone tell me whether this is OK? I would very much appreciate any advice.
Best wishes,
Kie Woo Nam
___________________________
Kie Woo Nam, PhD student
Division of Psychological Medicine
Institute of Psychiatry, King's College London
16 De Crespigny Park, Denmark Hill
London, SE5 8AF, UK
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