Hi,
I have found a minor naming bug in probtractx:
when running:
probtrackx --cthr=0.200 --forcedir --loopcheck -m
/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/reslice_mask/brain_mask_flirt.nii
--mode=seedmask --nsamples=1000 --nsteps=2000 --opd --os2t
--dir=/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/probtractx
--samples=merged
--seed=/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/wm_gm_interface/c113_co_COR_3D_IR_PREP_flirt_thresh_masked.nii
--steplength=0.500 --targetmasks=targets.txt
with targets.txt:
/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/threshold/mapflow/_threshold0/w2_mean_thresh.nii
/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/threshold/mapflow/_threshold1/w2_mean_thresh.nii
/media/data/2010reliability/workdir/pipeline/finger_foot_lips_seed/_subject_id_0/threshold/mapflow/_threshold2/w2_mean_thresh.nii
I get only one seeds_to_target volume (namely
seeds_to_w2_mean_thresh.nii). Fixing is just a question adding numbers
at the end of filenames.
Best regards,
Chris
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