Hi,
Are you using CNS 1.3 ? If so, I would suggest coming back to cns 1.21.
http://tech.dir.groups.yahoo.com/group/aria-discuss/message/1961
Regards,
Benjamin
On 3/30/11 12:31 PM, Piotr Wysoczanski wrote:
> Hi,
>
> Could you possibly help me with the error below, that ARIA/CNS gives me. Any suggestions are appreciated.
>
> CNSsolve>
> CNSsolve> evaluate ($swap = 1.0)
> EVALUATE: symbol $SWAP set to 1.00000 (real)
> CNSsolve> inline @RUN:protocols/swap.cns
> ASSFIL: file swap.cns opened.
> CNSsolve>!$Revision: 1.1.1.1 $
> CNSsolve>!$Date: 2010/03/23 15:27:16 $
> CNSsolve>!$RCSfile: swap.cns,v $
> CNSsolve>
> CNSsolve>
> CNSsolve>REMARK protocols/swap.cns
> CNSsolve>REMARK swaps systematically randomly selected methylene protons
> CNSsolve>REMARK accepts the conformation with lower noe energy
> CNSsolve>REMARK can be used in conjunction with floating assignment
> CNSsolve>REMARK uses the ARIA FLIP command
> CNSsolve>
> CNSsolve>! **********************************************
> CNSsolve>! * Author and copyright: Michael Nilges, EMBL *
> CNSsolve>! * No warranty implied or expressed *
> CNSsolve>! * All rights reserved *
> CNSsolve>! **********************************************
> CNSsolve>
> CNSsolve>
> CNSsolve>set echo off message off end
> %SELRPN-ERR: selection has to end with a ")":
> do (q = q * ran()) (attr q> -0.5)
> ^^^
> %CNSsolve-ERR: unrecognized command:
> do (q = q * ran()) (attr q> -0.5)
> ^^^
> %CNSsolve-ERR: unrecognized command:
> do (q = q * ran()) (attr q> -0.5)
> ^
> %SELRPN-ERR: selection has to end with a ")":
> for $id in id ((attr store9=1) and name h*2 and attr q< $swap and attr q> -0.5)
> ^^^
> %CNSsolve-ERR: LOOP expected:
> for $id in id ((attr store9=1) and name h*2 and attr q< $swap and attr q> -0.5)
> ^^^
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
> ARIFLI: 329210.93182
>
> ... and so on till infinity...
>
> Kind regards,
>
> Piotrek
--
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Dr Benjamin Bardiaux | Bioinformatique Structurale
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25,28 rue du Docteur Roux 75015 Paris, France
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