Hi,
Have you tried to install fsl in a different local (e.g. /home/fsl )
while running as the normal fsl user (not root)?
I think you should try that and see if it works.
If it does not, please provide us with full details on
what errors or outputs you saw during the installation
process.
All the best,
Mark
On 18 Feb 2011, at 20:50, Chiharu AMEMIYA wrote:
> And I tried root account, but it failed as well.
>
>
>
> On 17 February 2011 19:27, Xue, Feng <[log in to unmask]> wrote:
> Sorry, I forgot your fsl account is not in sudoers, can you try root account?
>
> On Thu, Feb 17, 2011 at 11:10 AM, Chiharu AMEMIYA
> <[log in to unmask]> wrote:
> > Hi Xue,
> > I just installed fsl on my Windows PC.
> > And I tried this command, then got these sentences,
> > ---
> > [fsl@localhost Desktop]$ sudo fsl_installer.sh
> > Password:
> > fsl is not in the sudoers file. This incident will be reported.
> > [fsl@localhost Desktop]$ pwd
> > /home/fsl/Desktop
> > ---
> > I think it didn't make any sense.
> > Thank you,
> > Chiharu
> >
> > On 17 February 2011 18:50, Xue, Feng <[log in to unmask]> wrote:
> >>
> >> Hi,
> >>
> >> He is of course under linux, perhaps in fsl' virtual machine I guess
> >>
> >> Chemaru, are you going to upgrade your current fsl installation? may
> >> be you need try "sudo fsl_installer.sh"
> >>
> >> On Thu, Feb 17, 2011 at 10:27 AM, Alan Francis <[log in to unmask]>
> >> wrote:
> >> > Hi Chemaru:
> >> >
> >> > Since this is a Windows computer, you would need Administrator
> >> > privileges to
> >> > install and run anything. The "root" and "sudo" are for Linux.
> >> >
> >> >
> >> >
> >> > On Thu, Feb 17, 2011 at 8:22 PM, Chiharu AMEMIYA
> >> > <[log in to unmask]>
> >> > wrote:
> >> >>
> >> >> Hi,
> >> >> Thank you for your advice.
> >> >> But how can I root or add fsl to my sudoer list?
> >> >> I've already checked about it on FSL webpage, but I couldn't find out.
> >> >> Regards
> >> >> Chiharu
> >> >> On 17 February 2011 18:13, Xue, Feng <[log in to unmask]> wrote:
> >> >>>
> >> >>> Hi,
> >> >>> you need to be either root or to add fsl to your sudoer list
> >> >>>
> >> >>> On Thu, Feb 17, 2011 at 9:20 AM, Chiharu AMEMIYA
> >> >>> <[log in to unmask]> wrote:
> >> >>> > To whom it may concern,
> >> >>> > I would like to ask about FSL install on Windows.
> >> >>> > I tried again and again, but every time I failed.
> >> >>> > I pasted what I got until now on a terminal window below.
> >> >>> > Could you please tell me how can I figure out?
> >> >>> > ---
> >> >>> > [fsl@localhost ~]$ pwd
> >> >>> > /home/fsl
> >> >>> > [fsl@localhost ~]$ cd /home/fsl/Desktop/usr/
> >> >>> > [fsl@localhost usr]$ pwd
> >> >>> > /home/fsl/Desktop/usr
> >> >>> > [fsl@localhost usr]$ ls -al
> >> >>> > total 1340160
> >> >>> > drwxrwxr-x 2 fsl fsl 4096 Feb 17 11:14 .
> >> >>> > drwxr-xr-x 3 fsl fsl 4096 Feb 17 11:12 ..
> >> >>> > -rw-rw-r-- 1 fsl fsl 1370911031 Feb 17 10:50
> >> >>> > fsl-4.1.7-centos5_32.tar.gz
> >> >>> > -rw-rw-r-- 1 fsl fsl 37127 Feb 17 10:21 fsl_installer.sh
> >> >>> > [fsl@localhost usr]$ bash fsl_installer.sh
> >> >>> > FSL install script
> >> >>> > ==================
> >> >>> >
> >> >>> > Looking for FSL tarball in the current directory...
> >> >>> > ******************************
> >> >>> > *********************************
> >> >>> > No FSL tarball specified, assuming you want me to install
> >> >>> > /home/fsl/Desktop/usr/fsl-4.1.7-centos5_32.tar.gz
> >> >>> > from the current directory.
> >> >>> > ***************************************************************
> >> >>> >
> >> >>> > Where would you like to install FSL to? [/usr/local]
> >> >>> > touch: cannot touch `/usr/local/.fsl-test': Permission denied
> >> >>> > Will require Administrator priviledges to write to '/usr/local'
> >> >>> > Enter a password to elevate to Administrator rights when prompted
> >> >>> > Password:
> >> >>> > fsl is not in the sudoers file. This incident will be reported.
> >> >>> > Sorry, you cannot install FSL as this user, either install as the
> >> >>> > root
> >> >>> > user
> >> >>> > or as a user with sudo rights.
> >> >>> > You can then re-run fsl_installer.sh with the -e option to setup
> >> >>> > your
> >> >>> > user
> >> >>> > account for running FSL.
> >> >>> > [fsl@localhost usr]$ bash fsl_installer.sh -e
> >> >>> > FSL install script
> >> >>> > ==================
> >> >>> >
> >> >>> > Patching environment
> >> >>> > Where is FSL installed? [/usr/local]
> >> >>> > '/usr/local' doesn't appear to contain a FSL install.
> >> >>> > Where is FSL installed? [/usr/local]
> >> >>> > '/usr/local' doesn't appear to contain a FSL install.
> >> >>> > Where is FSL installed? [/usr/local]usr
> >> >>> > 'usr' doesn't exist, would you like me to create it? [yes]
> >> >>> > .bash_profile already contains a FSLDIR definition which is
> >> >>> > wrong.\nFixing
> >> >>> > FSLDIR configuration...
> >> >>> > '/home/fsl/.bash_profile' updated with new FSLDIR definition.
> >> >>> > bash: usr/fsl/etc/fslconf/fsl.sh: No such file or directory
> >> >>> >
> >> >>> > [fsl@localhost usr]$ bash users
> >> >>> > /usr/bin/users: /usr/bin/users: cannot execute binary file
> >> >>> > [fsl@localhost usr]$ tcsh users
> >> >>> > users: No such file or directory.
> >> >>> > [fsl@localhost usr]$
> >> >>> >
> >> >>> > ---
> >> >>> >
> >> >>> >
> >> >>> > Sincerely,
> >> >>> > Chiharu
> >> >>> > --
> >> >>> >
> >> >>> >
> >> >>> > ----------------------------------------------------------------------------------------------
> >> >>> > Chiharu Amemiya (Master student)
> >> >>> > Master of Research in Brain Imaging and Cognitive Neuroscience
> >> >>> > Cognitive Development Group
> >> >>> > University of Birmingham Infant and Child Laboratory
> >> >>> > University of Birmingham
> >> >>> > Edgbaston, Birmingham, B15 2TT
> >> >>> > T: +44 (0) 121 414 7219
> >> >>> > E: [log in to unmask]
> >> >>> > W:http://www.icl.bham.ac.uk/main.php
> >> >>> > http://sites.google.com/site/mccleerygroup/
> >> >>> >
> >> >>> >
> >> >>> > ----------------------------------------------------------------------------------------------
> >> >>> >
> >> >>>
> >> >>>
> >> >>>
> >> >>> --
> >> >>> Best Regards
> >> >>>
> >> >>> Xue, Feng Ph.D.
> >> >>> Major in Developmental Cognitive Neuroscience
> >> >>>
> >> >>> Psychology Department
> >> >>> University of Southern California
> >> >>> Los Angeles CA, 90089
> >> >>> Mobile: 310-904-2591
> >> >>> ==============================================
> >> >>> National Key Laboratory of Cognitive Neuroscience and Learning
> >> >>> Beijing Normal University
> >> >>> Beijing, China. 100875
> >> >>> Tel: +86-13810154455
> >> >>> web: http://psychbrain.bnu.edu.cn
> >> >>
> >> >>
> >> >>
> >> >> --
> >> >>
> >> >>
> >> >> ----------------------------------------------------------------------------------------------
> >> >> Chiharu Amemiya (Master student)
> >> >> Master of Research in Brain Imaging and Cognitive Neuroscience
> >> >> Cognitive Development Group
> >> >> University of Birmingham Infant and Child Laboratory
> >> >> University of Birmingham
> >> >> Edgbaston, Birmingham, B15 2TT
> >> >> T: +44 (0) 121 414 7219
> >> >> E: [log in to unmask]
> >> >> W:http://www.icl.bham.ac.uk/main.php
> >> >> http://sites.google.com/site/mccleerygroup/
> >> >>
> >> >>
> >> >> ----------------------------------------------------------------------------------------------
> >> >
> >> >
> >>
> >>
> >>
> >> --
> >> Best Regards
> >>
> >> Xue, Feng Ph.D.
> >> Major in Developmental Cognitive Neuroscience
> >>
> >> Psychology Department
> >> University of Southern California
> >> Los Angeles CA, 90089
> >> Mobile: 310-904-2591
> >> ==============================================
> >> National Key Laboratory of Cognitive Neuroscience and Learning
> >> Beijing Normal University
> >> Beijing, China. 100875
> >> Tel: +86-13810154455
> >> web: http://psychbrain.bnu.edu.cn
> >
> >
> >
> > --
> > ----------------------------------------------------------------------------------------------
> > Chiharu Amemiya (Master student)
> > Master of Research in Brain Imaging and Cognitive Neuroscience
> > Cognitive Development Group
> > University of Birmingham Infant and Child Laboratory
> > University of Birmingham
> > Edgbaston, Birmingham, B15 2TT
> > T: +44 (0) 121 414 7219
> > E: [log in to unmask]
> > W:http://www.icl.bham.ac.uk/main.php
> > http://sites.google.com/site/mccleerygroup/
> > ----------------------------------------------------------------------------------------------
> >
>
>
>
> --
> Best Regards
>
> Xue, Feng Ph.D.
> Major in Developmental Cognitive Neuroscience
>
> Psychology Department
> University of Southern California
> Los Angeles CA, 90089
> Mobile: 310-904-2591
> ==============================================
> National Key Laboratory of Cognitive Neuroscience and Learning
> Beijing Normal University
> Beijing, China. 100875
> Tel: +86-13810154455
> web: http://psychbrain.bnu.edu.cn
>
>
>
> --
> ----------------------------------------------------------------------------------------------
> Chiharu Amemiya (Master student)
> Master of Research in Brain Imaging and Cognitive Neuroscience
> Cognitive Development Group
> University of Birmingham Infant and Child Laboratory
>
> University of Birmingham
> Edgbaston, Birmingham, B15 2TT
> T: +44 (0) 121 414 7219
> E: [log in to unmask]
> W:http://www.icl.bham.ac.uk/main.php
> http://sites.google.com/site/mccleerygroup/
> ----------------------------------------------------------------------------------------------
>
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