Thanks for your help Saad!
Cheers,
Luis.
On Sat, Feb 12, 2011 at 12:56 PM, Saad Jbabdi <[log in to unmask]> wrote:
> Hi
> If you want to visualise single streamlines, you need to use a software that does deterministic tractography, which FSL doesn't, sorry.
> You can save the individual sample streamlines that form the distribution (using --verbose=2), but these will have coordinates in DTI space (not seed space), and will represent random samples, each of which will not be smooth looking (eg because of probabilistic interpolation).
>
> Cheers,
> Saad.
>
>
>
> On 11 Feb 2011, at 12:48, Luis Moris wrote:
>
>> Hi everyone,
>>
>> I'm using FSL for tracking brain fibers. I have succesfully done all steps until probabilistic tractography, so now I have the files fdt_paths.nii.gz and waytotal, that I can visualize in fslview without any problem.
>>
>> But my main interest is to be able to work with the single fibers that form this tracts, is there any way of calculating these fibers in FSL?
>>
>> Thanks a lot in advance for you help,
>>
>> Luis.
>>
>
> --
> Saad Jbabdi
> University of Oxford, FMRIB Centre
>
> JR Hospital, Headington, OX3 9DU, UK
> (+44)1865-222466 (fax 717)
> www.fmrib.ox.ac.uk/~saad
>
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