Hi Michael,
Thanks for the cat, though I have enough already. :-)
The document location is quite standard, it's just that I'm so used to
having FSL installed and located in a non-standard way that I did not
think to look there. I would encourage keeping the /usr/share/doc location.
Regards,
Chuck
On 1/26/11 10:03 AM, Michael Hanke wrote:
> On Wed, Jan 26, 2011 at 09:43:42AM -0800, Chuck Theobald wrote:
>
>> On a NeuroDebian installation, are the long.q, verylong.q, short.q
>> and veryshort.q queues needed? Does SGE decide which queue to use
>> for a particular job?
>>
> michael@meiner ~ % cat /usr/share/doc/fsl/README.Debian |tail -n16
>
> Sun Gridengine
>
> FSL is configured to submit jobs to a running Sun Gridengine if requested.
> Appropriate queues are chosen by SGE based on the estimated processing time
> reported by FSL. In contrast to upstream FSL, the Debian package does not
> rely on a fixed set of queue names. By default no jobs are submitted and all
> processing is done locally, even if a Gridengine is running. Cluster
> computing is enabled by setting the environment variable FSLPARALLEL=1. This
> can be done on a case-by-case basis, or system-wide in /etc/fsl/4.1/fsl.sh.
> Please see this file for more configuration options, including the cluster
> email setup. If FSL is used in conjunction with a Sun Gridengine installed by
> the corresponding Debian package, no further configuration should be
> necessary.
>
> -- Michael Hanke<[log in to unmask]>, Fri, 14 Jul 2010 11:12:43 -0500
>
>
> (I have to admit that the README file is in a somewhat unexpected place
> -- will fix that)
>
> Michael
>
>
--
Chuck Theobald
System Administrator
The Robert and Beverly Lewis Center for Neuroimaging
University of Oregon
P: 541-346-0343
F: 541-346-0345
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