On Tue, Jan 25, 2011 at 07:59:05AM +0000, Riccardo Navarra wrote:
> I think SGE changed.
>
> The gridengine package in Ubuntu 10.10 repository installs Grid Engine
> 6.2u4 (mainly in /usr/lib/gridengine/, /usr/share/gridengine/ .
> "About" tab in qmon GUI reports: "Grid Engine is based on code donated
> by Sun Microsystems..."
>
> In this environment, there are no "SGE_ROOT" nor
> "/usr/local/share/sge/default/common/setting.sh" (nor any "sge"
> directory, of course) that fsl_sub look for to set-up parallelization
> in FSL.
The Debian package of FSL works fine with the Debian package of SGE,
even if no SGE_ROOT is set and no setting.sh is available. The 'fsl'
manpage has more information. Essentially, you only have to set
FSLPARALLEL=1 to enable submission to SGE within FSL.
Michael
--
Michael Hanke
http://mih.voxindeserto.de
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