Hello Joseph,
> Having trouble getting Coot either stand alone version or the one loaded
> by Phenix to access monomers such as DTT, glycerol, etc I assume through
> the CCP4 monomer library. If I insert the following in the phenix file,
> start_coot.sh:
>
> DYLD_LIBRARY_PATH=/Applications/ccp4-6.1.13/lib:$DYLD_LIBRARY_PATH
> export DYLD_LIBRARY_PATH
I think Nat Echols already answered this question on the PHENIX mailing
list, but perhaps you missed it.
In any case, the DYLD_LIBRARY_PATH is not what you are looking for.
Start PHENIX in debug mode from the command line. I.e.:
phenix --debug
When you click the Coot button, you will see Coot's start up messages
appear in the terminal you used to launch PHENIX. In the start up messages
will be the path to the monomer database, etc, that Coot is using.
Bill Scott's Coot package puts COOT_REFMAC_LIB_DIR into the environment
before running, so if I were a guessing man, I'd say that it's loading the
monomers from /Library/Coot/share/coot/lib.
> Currently, my version of coot resides in:
> /usr/local/bin/coot
If you open this file in a text editor, you can change the location of the
COOT_REFMAC_LIB_DIR setting.
-ben
--
| Ben Eisenbraun
| SBGrid Consortium | http://sbgrid.org |
| Harvard Medical School | http://hms.harvard.edu |
|