This was one of the things that Indonesia was written for (a long time ago, in
a galaxy far, far away), although I'm not sure if it will still run. If you're
desperate, see http://xray.bmc.uu.se/~dennis/
--Gerard
On Fri, 26 Nov 2010, Muhammed bashir Khan wrote:
> Dear All;
>
> I have structures of two protein one full-length while the other truncated
> at the c-terminus(one from prokaryote while the other from eukaryotes).
> Now I want to do the sequence alignment of these two proteins from all
> species in such a way that the structure based sequence remain constant
> while extending the sequence only at the c-terminus. Remember the
> structure are known only for the two proteins.
>
> Any suggestion will be highly appreciated!!!!!
>
> Regards and have a nice weekend.
>
> Bashir
>
Best wishes,
--Gerard
******************************************************************
Gerard J. Kleywegt
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN
http://xray.bmc.uu.se/gerard/ mailto:[log in to unmask]
******************************************************************
The opinions in this message are fictional. Any similarity
to actual opinions, living or dead, is purely coincidental.
******************************************************************
|