Hello TBSS experts,
I'm trying to run TBSS on MD but am getting the following error message.
Could someone please tell me what I'm doing wrong?
using pre-chosen registration target: target
upsampling alternative images into standard space
CON_NeoBIG_001_FA
......
......
PAT_NeoBIG_179_FA
merging all upsampled MD_files_renamed images into single 4D image
projecting all_MD_files_renamed onto mean FA skeleton
cat: thresh.txt: No such file or directory
** ERROR (nifti_image_read): failed to find header file for 'all_MD_files_renamed_skeletonised'
** ERROR: nifti_image_open(all_MD_files_renamed_skeletonised): bad header info
Error: failed to open file all_MD_files_renamed_skeletonised
ERROR: Could not open image all_MD_files_renamed_skeletonised
Image Exception : #22 :: Failed to read volume all_MD_files_renamed_skeletonised
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl-4.1.4/bin/tbss_non_FA: line 104: 15986 Aborted (core dumped) ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
now run stats - for example:
randomise -i all_MD_files_renamed_skeletonised -o tbss_MD_files_renamed -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
(after generating design.mat and design.con)
Thank you in advice for your help!
Georgios Alexandrou M.D.
Karolinska Institutet
|