Dear All,
Just to make sure nobody misunderstands this:
The nucleotides in question are downloaded OK and EVERYTHING WORKS, (as
far as we know). We did not have reference coordinates to show a pretty
picture, but we should have the data you need to do everything else. As
Wayne says, we have tried to improve the warning message.
Yours,
Rasmus
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Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Tue, 16 Nov 2010, Wayne Boucher wrote:
> Hello,
>
> We've changed the message to hopefully be less confusing. So the chemical
> compound was downloaded ok (and there should be a message in the console
> saying this) but the coordinates are not available so the compound cannot be
> drawn in that dialog.
>
> Wayne
>
> On Mon, 15 Nov 2010, Laura Anne Johnson wrote:
>
>> To whom it may concern,
>> I'm trying to use analysis to make assignments of an RNA that has
>> nonstandard
>> nucleotides. I see that CCPNMR has the three letter codes for the
>> nucleotides I'd
>> like to use, CFL, OMG, ADE, UMF, A2M, and T11, but when I click on the
>> molecule
>> in the "small compounds" tab in the Molecule window, I get a message that
>> says
>> "Chemical component not available locally. OK to download to local
>> database?"
>> When I click "yes" I get the message "No atom coordinates are available for
>> chemical compound OMG" for instance. I've tried looking up OMG on EBI's
>> website
>> but don't know what file I should download and to where I should save it or
>> how to
>> import it into CCPNMR. I'd appreciate some advice.
>> Thank you,
>> Laura J.
>>
>
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