Dear Dhiraj;
Please try the following web site
http://www.cgl.ucsf.edu/home/meng/grpmt/structalign.html
Here you will find a number of option for structure base sequence
alignment no matter what is the similarity of your structures. Regarding
the RMSD of every residues you can find this option by using the Dalilite
server.
Good luck
Bashir
On Fri, November 19, 2010 23:55, Srivastava, Dhiraj (MU-Student) wrote:
> Hi All
> does anyone know any software that can calculate and print out RMSD
> of every residue (c alpha will be good) for homologous structures
> which has only 30-40 % sequence similarity? I looked on the web but
> all the software that I found require the sequence to be the same
> for both structure.
>
> Thank you
>
> Dhiraj
>
--
Muhammad Bashir Khan
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Department for Structural and Computational Biology
Max F. Perutz Laboratories
University of Vienna
Campus Vienna Biocenter 5
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Austria
Austria
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