Dear FSL experts,
I am attempting to perform a VBM analysis in FSL, however, I am having some
trouble with performing fslvbm_1_bet. I have exactly followed the steps
decribed on the FSL website (creating a directory called my_fsl_vbm, copying
all my T1 structural images to it, and creating a template list), nonetheless,
I keep getting the same Error Message over and over (see below)
could you be so kind and provide me with some advice.
kind regards,
Moji Aghajani
research master student
Leiden University (NL).
Error Message:
[moji@fmri2]/srv/fmri-nonraw/neuro/moji/DATA/my_fsl_vbm% fslvbm_1_bet -b
/opt/fsl/bin/fslvbm_1_bet: line 94: cd: FAi: No such file or directory
*FAi
Error: input image *FAi not valid
*FAi
ERROR:: Unrecognised value (ANALYZE) of environment variable FSLOUTPUTTYPE
Legal values are: NIFTI, NIFTI_PAIR, NIFTI_GZ, NIFTI_PAIR_GZ
Cannot open slicesdir/grota.png for reading
/opt/fsl-4.1.0-centos4_64/bin/slicesdir: line 132: 11169 Segmentation fault
${FSLDIR}/bin/pngappend $convertopts slicesdir/${Q}.png
Finished. To view, point your web browser at
file:/srv/fmri-nonraw/neuro/moji/DATA/my_fsl_vbm/slicesdir/index.html
|