Okay, I don't know how FNIRT handles an --aff argument, if it automatically
incorporates that into the resulting warp or not. Perhaps Jesper or Mark
knows?
Peace,
Matt.
-----Original Message-----
From: Francis Wong [mailto:[log in to unmask]]
Sent: Monday, October 11, 2010 2:35 PM
To: [log in to unmask]; Matt Glasser
Subject: Re: averaging prob tracks DTI
Hi Matt,
Thanks for the quick reply.
As for the premat and postmat, there is something strange.
I did the forward applywarp (to MNI) with --premat but the output does not
much what I've got from TBSS (i.e. dti_FA_FA_to_target.nii.gz). However, if
I *did not* supply the --premat they match perfectly.
Thanks,
Francis
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