Hi Reem,
>...save that as design.fsf for that subject
Yes.
>make it executable then
Not really. Your script needs to be executable.
Assume you generate 4 *.fsf files for 4 of your subjects A-D. If you don't have any knowledge of scripting you can generate a plain text file, lets say 'reem.txt' which contains
feat A.fsf
feat B.fsf
feat C.fsf
feat D.fsf
Make this file executable:
chmod 777 reem.txt
and do:
./reem.txt
This will run feat using your 4 design.fsf's. The data (say A.nii.gz to D.nii.gz) and *.fsf files are assumed to be stored in the directory where reem.txt resides (you don't need the txt ending btw). The outputs will also be there A.feat etc. Thus, nothing is overwritten. Alternatively (and much more conveniently) you can use the scripting Cornelius has suggested.
Best,
Andreas
________________________________________
Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von Reem Jan [[log in to unmask]]
Gesendet: Mittwoch, 22. September 2010 06:20
An: [log in to unmask]
Betreff: Re: [FSL] AW: multiple inputs in FEAT using 3 column format
Hi Andreas and/or Cornelius
Sorry in advance about the unintelligent questions. Could I just clarify
that I'm understanding you correctly, so in order to make the design.fsf
files for each subject, I can use the FEAT Gui to make the design.fsf
but change the following for each subject:
1. Functional 4D data
2. Onset files
3. Main structural
Then save that as design.fsf for that subject, make it executable then
I'd need to run all subjects from the command line?
I'm just confused as to where all the outputs are going to be stored and
whether all .fsf files should be saved in the same folder.. I don't want
to set it up wrong and have each subject's FEAT overwrite the previous
subject's?
Thanks for all your help :)
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
Behalf Of Andreas Bartsch
Sent: Monday, September 20, 2010 7:21 PM
To: [log in to unmask]
Subject: [FSL] AW: multiple inputs in FEAT using 3 column format
Hi Reem,
unfortuantely, the data / runs you load into the Feat gui must use the
same model. But you can script running multiple seperate *.fsf files
(which all have to be executed by feat from command line which you can
save in a text file - just don't forget to make that executable by
chmod'ing).
Hope all is well, cheers-
Andreas
________________________________
Von: FSL - FMRIB's Software Library [[log in to unmask]] im Auftrag von
Reem Jan [[log in to unmask]]
Gesendet: Montag, 20. September 2010 00:52
An: [log in to unmask]
Betreff: [FSL] multiple inputs in FEAT using 3 column format
Dear FSLers
I would like to run multiple subject First Level Analyses in FEAT. I
know I can load multiple inputs into the FEAT GUI, however, when it
comes to the model specification I'm not sure how to load multiple .dat
onset files (I use a Custom 3-column format). Could someone please let
me know how I can do this?
Many thanks
Reem
__________ Information from ESET NOD32 Antivirus, version of virus
signature database 5462 (20100919) __________
The message was checked by ESET NOD32 Antivirus.
http://www.eset.com
__________ Information from ESET NOD32 Antivirus, version of virus
signature database 5468 (20100921) __________
The message was checked by ESET NOD32 Antivirus.
http://www.eset.com
__________ Information from ESET NOD32 Antivirus, version of virus
signature database 5468 (20100921) __________
The message was checked by ESET NOD32 Antivirus.
http://www.eset.com
|