I'm running 4.1.3
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From: FSL - FMRIB's Software Library [[log in to unmask]] On Behalf Of Matthew Webster [[log in to unmask]]
Sent: August-26-10 11:02 AM
To: [log in to unmask]
Subject: Re: [FSL] Featquery never finishes
Hello,
cat $FSLDIR/etc/fslversion
will give you the full FSL version number.
Many Regards
Matthew
> Hi,
>
> Thanks for getting back to me. I'm running FSL 4.1 which appears to be the newest, and my structural images are 255x255x71 I believe. Is there a ballpark time I can expect invwarp to require?
>
> Sean
> ________________________________________
> From: FSL - FMRIB's Software Library [[log in to unmask]] On Behalf Of Mark Jenkinson [[log in to unmask]]
> Sent: August-26-10 10:55 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Featquery never finishes
>
> Hi,
>
> Are you running the latest version of FSL?
> The invwarp command used to take a long
> time to run but should work more quickly now.
> What resolution are your structural images?
> That might have an impact too.
>
> All the best,
> Mark
>
>
>
> On 26 Aug 2010, at 14:30, Sean McWhinney wrote:
>
>> I'm quite new to fMRI analysis and so the data I'm currently working
>> with is my first experience with FSL. Simply put, attempting to run
>> Featquery on Feat directories with nonlinear registration seems to
>> cause it never to finish. A featquery directory is created with
>> report.log & html files, but the log file never gets farther than
>> "Found nonlinear warp field... Starting warp field inversion...".
>> Featquery never seems to progress beyond this point. Using 'top'
>> from terminal indicates that the invwarp process is in fact running,
>> and taking a large amount of CPU power, but it seems that this never
>> finishes regardless of how much time I give it.
>>
>> Any thoughts would be greatly appreciated!
>>
>
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