Hi! I have two (hopefully quick) questions.
1. I am running a session level model on a series of datasets. It is an almost identical model for everyone. However, the model occasionally fails to run. I am running the modelling separately to preprocessing, which was previously completed. All the options look fine through the GUI.. dataset, output dir, confound file, and regressors. The design matrix generates without a problem via gui. Below is the logfile... any advice for what I'm doing wrong/what I should check here?
2. If you do temporally high-pass filter the data during preprocessing, but do not do so in the model, how significantly is this likely to impact your model fit/results?
Thanks!
Chris
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Progress Report / Log
Started at Wed Jul 21 12:02:16 EDT 2010
Feat main script
/bin/cp /tmp/feat_9N9zkz.fsf design.fsf
/usr/local/fsl/bin/feat_model design
mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;ln -s /usr/local/fsl/doc/images .files/images
/usr/local/fsl/bin/fsl_sub -T 26 -l logs -N feat2_pre -j featModelID /usr/local/fsl/bin/feat /mnt/nfs/data/STUDY1/patient036/task1/b_run1_on/op_on.feat/design.fsf -D /mnt/nfs/data/STUDY1/patient036/task1/b_run1_on/op_on.feat -I 1 -prestats
12344
/usr/local/fsl/bin/fsl_sub -T 345 -l logs -N feat3_film -j 12344 /usr/local/fsl/bin/feat /mnt/nfs/data/STUDY1/patient036/task1/b_run1_on/op_on.feat/design.fsf -D /mnt/nfs/data/STUDY1/patient036/task1/b_run1_on/op_on.feat -I 1 -film
Prestats
/usr/local/fsl/bin/fslmaths /mnt/nfs/data/STUDY1/patient036/task1/a_preprocessed1/predata.feat/filtered_func_data prefiltered_func_data -odt float
Total original volumes = 266
/usr/local/fsl/bin/fslroi prefiltered_func_data example_func 133 1
/usr/local/fsl/bin/fslmaths prefiltered_func_data filtered_func_data
/usr/local/fsl/bin/fslmaths filtered_func_data -Tmin -bin mask -odt char
/usr/local/fsl/bin/fslstats filtered_func_data -k mask -R | awk '{ print }' -
0.462836
/usr/local/fsl/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*
Stats
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-1_cue.txt custom_timing_files/ev1.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-2_task_con1.txt custom_timing_files/ev2.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-3_task_con2.txt custom_timing_files/ev3.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-4_task_con3txt custom_timing_files/ev4.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-5_cont_con1.txt custom_timing_files/ev5.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-6_cont_con2.txt custom_timing_files/ev6.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-7_cont_con3.txt custom_timing_files/ev7.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-8_probe1_task.txt custom_timing_files/ev8.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-9_probe2_cont.txt custom_timing_files/ev9.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-10a_cross.txt custom_timing_files/ev10.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-10b_square.txt custom_timing_files/ev11.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-10c_circle.txt custom_timing_files/ev12.txt
mkdir -p custom_timing_files ; /bin/cp /mnt/nfs/data/STUDY1/onsets_fsl/patient036/task1/chronological1/patient036_fl_1-10d_triangle.txt custom_timing_files/ev13.txt
cp /mnt/nfs/data/STUDY1/patient036/task1/flu_artregs_1_on.txt confoundevs.txt
/usr/local/fsl/bin/feat_model design confoundevs.txt
/usr/local/fsl/bin/film_gls -rn stats -sa -ms 5 filtered_func_data design.mat 0.462836
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