Dear FSL people,
Hi am trying to run MELODIC and FEAT (fsl 4.1.4) in a new computer (Linux CentOS 5) but I get the an error when fsl_sub is called, shown in the report below.
Can anyone tell how I can solve this problem? Do I have to edit fsl_sub (sge version is sge6.1u5) or is there another way (right now I cannot edit it)?
Thank you in advance!
Catarina.
---------------------
Progress Report / Log
Started at Wed Jul 7 12:53:07 CEST 2010
Feat main script
/bin/cp /tmp/feat_BCsOsh.fsf design.fsf
/tools/fsl/live/bin/feat_model design
mkdir .files;cp /tools/fsl/live/doc/fsl.css .files;ln -s /tools/fsl/live/doc/images .files/images
/tools/fsl/live/bin/fsl_sub -T 31 -l logs -N feat2_pre -j featModelID /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -I 1 -prestats
error: could not get environment variable SGE_QMASTER_PORT or service "sge_qmaster"
/tools/fsl/live/bin/fsl_sub -T 62 -l logs -N feat3_film -j error: /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -I 1 -film
error: could not get environment variable SGE_QMASTER_PORT or service "sge_qmaster"
/tools/fsl/live/bin/fsl_sub -T 0 -l logs -N feat4_post -j error: /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -poststats 0 0
error: could not get environment variable SGE_QMASTER_PORT or service "sge_qmaster"
/tools/fsl/live/bin/fsl_sub -T 30 -l logs -N feat5_reg -j error: /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -I 1 -reg
error: could not get environment variable SGE_QMASTER_PORT or service "sge_qmaster"
/tools/fsl/live/bin/fsl_sub -T 15 -l logs -N feat4_post -j error:,error: /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -poststats 1 0
error: could not get environment variable SGE_QMASTER_PORT or service "sge_qmaster"
/tools/fsl/live/bin/fsl_sub -T 1 -l logs -N feat5_stop -j error:,error:,error:,error: /tools/fsl/live/bin/feat /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat/design.fsf -D /home/csaiote/VisMo-work/Data/AE4917_20100301/AE4917_20100301_r2.feat -stop
|