Dear Henry,
Currently we don't have any standard carbohydrates with coords. They
were supposed to be coming from the EurocarbDB project, but there have
been glitches ...
It looks as though FormatConverter requires PDB CONECT records in
order to build the bonds. Attached is a PDB file for galactose
downloaded from PDBe (coords are representative; taken from high res
xtal structure). This converted fine in terms of bonds. I will confirm
that this is how FormatConverter works with the author, Wim Vranken.
It also looks as though this import does not populate the 3 letter
code for the residue - I am still working on understanding precisely
why.
John (Ionides)
(sent by me because he's not registered)
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