Dear Vandana,
What kind of fold prediction? I have the impression that fold prediction
will not give a sufficiently real model to use in MR
What means "100 % identical fold" ?
Do you have root-mean-square deviation of CA atoms between your
predicted fold and the model? Or maybe was the last step of
"fold prediction" actually homology modeling on a protein with
similar fold?
Feeling skeptical today,
Ed
Vandana Kukshal wrote:
> hello sir ,
>
> recently i have collected one data of 3.0 A of a protein having no
> sequence homology with any known PDB .
> but
> while fold prediction i got 100 % identical fold with some of the protein .
> space group of my protein is P622 and showing 6 molecule in a assymetric
> unit.
> the homologous fold proteins are trimer protein.
> can i run MR in this case . how i should proceed.
> i m trying for MIR also .
> regards
> vandana
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