Hello,
Yes, if you run randomise without asking for any outputs, it will run for a single permutation only ( and display some basic information on screen ).
Many Regards
Matthew
> Sorry for a follow up question again,
>
> I retried running randomise asking it to correct for each voxel using T2 image as a regressor and while carrying out Threshold-Free Cluster Enhancement with 2D optimisation (--T2)
>
>
> randomise -i all_FA_skeletonised -o tbss_with_T2 -m mean_FA_skeleton_mask -d designT2.mat -t designT2.con -n 500 --T2 --vxf=all_B0.nii --vxl=3
>
> and doing so started the permutations for me and it did not throw an error that it used to. So, I assume I was just missing on the --T2 (or -x) option.
> Am I correct ? I know its a drag but I just want to make sure that I am doing the analysis correctly.
>
> Thank you
> Sincerely,
> Ankit Master
>
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