Thanks very much Matt it worked.
Venkat
________________________________
From: FSL - FMRIB's Software Library on behalf of Matt Glasser
Sent: Mon 6/28/2010 8:36 PM
To: [log in to unmask]
Subject: Re: [FSL] Eddy_current_correction
Yes. And you would have 5 such commands and change the numbers to reflect
the number of volumes in each average (that example has 33 volumes).
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Rajagopalan, Venkateswaran
Sent: Monday, June 28, 2010 1:30 PM
To: [log in to unmask]
Subject: Re: [FSL] Eddy_current_correction
Thanks Matt,
Just a clarification so "fslroi big4d_corr ave1_corr 0 33" "fslroi
big4d_corr ave2_corr 33 33" are the commands used to split am i right.
Thanks
venkat
-----Original Message-----
From: FSL - FMRIB's Software Library on behalf of Matt Glasser
Sent: Mon 6/28/2010 1:30 PM
To: [log in to unmask]
Subject: Re: [FSL] Eddy_current_correction
You can merge the 5 runs, do eddy_correct on all of them and then split them
back out. An example of this code is on the list:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;1ccc5e02.1005
Peace,
Matt.
_____
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Rajagopalan, Venkateswaran
Sent: Monday, June 28, 2010 10:55 AM
To: [log in to unmask]
Subject: [FSL] Eddy_current_correction
Hi All,
We have diffusion data set acquired with 5 trails/repetitions(in single time
point/cross sectional) for each and every subject. I am wondering while
doing eddy current distortion do i do it separately for each and every trial
then use FLIRT to register all the trails to first trail or so before doing
tensor fit.
Thanks
venkat
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