Hello Team FSL,
I've recently started working with fslvbm for use with patient data with large stroke lesions. In generating a template it uses FNIRT to register the subjects, and I'm wondering if there's any way to integrate options from FNIRT. Specifically, I'd like to be able to mask out lesions from registration (and potentially analysis) since I've seen that this helps the registration tremendously for these patients.
Thank you for your time,
Benjamin
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