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FSL  June 2010

FSL June 2010

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Subject:

Re: error: child killed: SIGABRT

From:

Joseph Galea <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Thu, 17 Jun 2010 08:37:57 -0400

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (135 lines)

Hi Steve,

there are no spaces in the filename. I get this from fslhd:

sizeof_hdr     348
data_type      FLOAT32
dim0           4
dim1           96
dim2           96
dim3           49
dim4           160
dim5           1
dim6           1
dim7           1
vox_units      mm
time_units     s
datatype       16
nbyper         4
bitpix         32
pixdim0        0.0000000000
pixdim1        2.5000000000
pixdim2        2.5000000000
pixdim3        3.0000000000
pixdim4        3.0000000000
pixdim5        1.0000000000
pixdim6        1.0000000000
pixdim7        1.0000000000
vox_offset     352
cal_max        24169.0000
cal_min        0.0000
scl_slope      1.000000
scl_inter      0.000000
phase_dim      0
freq_dim       0
slice_dim      0
slice_name     Unknown
slice_code     0
slice_start    0
slice_end      0
slice_duration 0.000000
time_offset    0.000000
intent         Unknown
intent_code    0
intent_name    
intent_p1      0.000000
intent_p2      0.000000
intent_p3      0.000000
qform_name     Unknown
qform_code     0
qto_xyz:1      2.500000  0.000000  0.000000  0.000000
qto_xyz:2      0.000000  2.500000  0.000000  0.000000
qto_xyz:3      0.000000  0.000000  3.000000  0.000000
qto_xyz:4      0.000000  0.000000  0.000000  1.000000
qform_xorient  Left-to-Right
qform_yorient  Posterior-to-Anterior
qform_zorient  Inferior-to-Superior
sform_name     Unknown
sform_code     0
sto_xyz:1      0.000000  0.000000  0.000000  0.000000
sto_xyz:2      0.000000  0.000000  0.000000  0.000000
sto_xyz:3      0.000000  0.000000  0.000000  0.000000
sto_xyz:4      0.000000  0.000000  0.000000  0.000000
sform_xorient  Unknown
sform_yorient  Unknown
sform_zorient  Unknown
file_type      NIFTI-1+
file_code      1
descrip        FSL4.0
aux_file

thanks,
Joe



Joseph M. Galea PhD
Research Fellow
Physical Medicine and Rehab
Johns Hopkins
http://josephmgalea.weebly.com
________________________________________
From: FSL - FMRIB's Software Library [[log in to unmask]] On Behalf Of Stephen Smith [[log in to unmask]]
Sent: Thursday, June 17, 2010 2:56 AM
To: [log in to unmask]
Subject: Re: [FSL] error: child killed: SIGABRT

Hi,

Are there any spaces in the directory or filenames of the image you're trying to select?   What do you get if you type
fslhd <your4Dimage>

Cheers.



On 14 Jun 2010, at 23:37, Joe Galea wrote:

I am attempting to perform some analysis on the filtered functional data (PPI analysis). However, every time I attempt to simply upload the file through the GUI I receive this error message. This is with any image from any of my subjects. I have also tried to upload the original unfiltered data but still receive the message.

Any help on fixing this would be much appreciated.


child killed: SIGABRT
child killed: SIGABRT
   while executing
"exec sh -c "${FSLDIR}/bin/fslnvols $thefile 2> /dev/null" "
   (procedure "feat5:updateimageinfo" line 10)
   invoked from within
"feat5:updateimageinfo $w $i 1"
   (procedure "feat5:multiple_check" line 43)
   invoked from within
"feat5:multiple_check .r 0 1 1 d"
   invoked from within
".dialog1.cancel invoke"
   ("uplevel" body line 1)
   invoked from within
"uplevel #0 [list $w invoke]"
   (procedure "tk::ButtonUp" line 22)
   invoked from within
"tk::ButtonUp .dialog1.cancel"
   (command bound to event)

best regards,
Joe



---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)
[log in to unmask]<mailto:[log in to unmask]>    http://www.fmrib.ox.ac.uk/~steve
---------------------------------------------------------------------------

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