Hi FSLers---
I am trying to run feat on the first run of a five run event-related design. I am getting a consistent error in the Registration step when the script attempts to register the high_res (my structural image) to the template. I've attached a picture from the feat output. My structural image is converted from dicom to ANALYZE format with an internally developed script at the imaging center where I collect data. Based on previous suggestions, I have converted the image to NIFTI format using SPM, fslchfiletype command, and AFNI's 3dAFNItoNIFTI command. In all cases I am able to convert the file to NIFTI, swap dimensions so that the structural image and my EPI images are in the same orientation upon display, but when I run feat I get this same poor registration. Any suggestions would be much appreciated.
Thanks!
Ben
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