Hi,
Im running run_first_all script on different groups of subjects, and I noticed that the right and left lateral ventricles are not generated during the segmentation. I run the same command a few months ago with a similar dataset (same acquisition parameters) and all of the files, including the ventricles were generated. Is there a reason why the ventricles are missing? The version of FSL Im using is 4.1.5.
Sincerely,
Anastasia
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