If you want the complete sequence of the material that was
studied, rather than just a list of residues for which there
are coordinates, then the information that you need is on the
SEQRES records. So you could try
grep "^SEQRES"
followed by
cut -c 20-70
with appropriate file names specified. If there is more than
one chain you will need to get fancier in your cut.
Frances Bernstein
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On Sun, 4 Apr 2010, Rex Palmer wrote:
> Is there software that will extract a protein sequence in either 3 letter or
> single letter code from a given pdb file?
>
> Rex Palmer
> Birkbeck College
>
>
|