Hi Koene,
I'm not sure I follow you here.
When I look at:
fslview ${FSLDIR}/data/atlases/HarvardOxford/HarvardOxford-cort-
prob-2mm.nii.gz
the frontal pole is volume 0, not volume 7. This is also confirmed by
the atlas
tool and is also consistent with the file $FSLDIR/data/atlases/
HarvardOxford-Cortical.xml
where it has the line:
<label index="0" x="48" y="94" z="35">Frontal Pole</label>
Maybe you are getting confused with the maxprob images and their label
values. For example, the image:
${FSLDIR}/data/atlases/HarvardOxford/HarvardOxford-cort-maxprob-
thr50-2mm.nii.gz
shows the frontal pole with a value of 1, and in this image all values
are 1 more
than the values in the xml file (just take the values there and add
one to them).
I'm not sure where you got 7 from, unless you just mixed up frontal
pole and temporal pole (which is 7). Also, there are 48 regions, not
255.
I hope that this is helpful and not more confusing.
I couldn't follow your links to the previous posts, so I'm not sure if
they
clarified things more, but what I've said above is certainly true for
the
current version.
All the best,
Mark
On 26 Mar 2010, at 17:11, Koene Van Dijk wrote:
> Hi there,
>
>
> I’m looking for the list of region names that correspond to the
> numbers of the HarvardOxford cortical labels that can be found in
> FSLview.
>
> So if I load this:
> fslview ${FSLDIR}/data/atlases/HarvardOxford/HarvardOxford-cort-
> prob-2mm.nii.gz
> I see for instance that the frontal pole has value 7. I can even see
> all the labels when I choose: Atlas tools > Structures
>
> I would now just like to have the text file with the list of those
> values (like 7 for the frontal pole) of the cortical atlas.
>
> I’ve already found the subcortical labels here:
>
> http://www.fmrib.ox.ac.uk/fsl/first/cma_subcortical_label.html
>
>
> …thanks to this post:
>
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;hiJZzQ;20091127170456%2B0000_
>
>
>
>
>
> I’ve also see a list of 255 regions with numbers that don’t match up
> with the HarvardOxford cortical (or subcortical) labels from another
> post:
>
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;rCUe9g;20091130202704%2B0000
>
>
>
>
>
> So, can anyone tell me where I can find the HarvardOxford cortical
> labels? (or paste them into a reply?). That would be great.
>
>
>
> Thanks,
>
>
>
> Koene
>
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