Seems very strange that _all_fast_firstseg.nii.gz and
*_all_fast_origsegs.nii.gz don't overlap.
What commands did you run?
cheers,
Brian
> Hello FSL,
>
> I'm running FIRST and get to the stage where the first_flirt registrations
> look good when viewed with slicesdir, and it finishes producing these
> files:
>
> *_all_fast_firstseg.nii.gz
> *_all_fast_origsegs.nii.gz
> *.vtk
> *.bvars
>
> When I display the *_all_fast_firstseg.nii.gz over the original T1 image I
> fed into FIRST, it definitely is not matching up (segmentations look
> mis-registered) though there are structures defined in the
> *_all_fast_firstseg.nii.gz file.
>
> When I display the non-boundary corrected images
> *_all_fast_origsegs.nii.gz
> over the original T1 image I fed into FIRST, the segmentations are in the
> correct place.
>
> In the error logs, everything looks normal except for this:
>
> ::::::::::::::
> first_post.e15071.1
> ::::::::::::::
> Inconsistency in labelings passed to score
> Inconsistency in labelings passed to score
> Inconsistency in labelings passed to score
> Inconsistency in labelings passed to score
> Inconsistency in labelings passed to score
> Inconsistency in labelings passed to score
> ...
>
> Can you help me with what this error means and how to solve it?
>
> Thanks!!
> Jason
>
>
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