Hi,
I faced the same problem with my 2.8Å structure. But it was
alright with high resolution structure - so I thought the program is
resolution limited.
Regards,
Vimal
Quoting Jayashankar <[log in to unmask]>:
> Dear Victor,
>
> I faced the same problem and got the same error for arpwarp solvent module,
> and I have even communicated you through my system admin for arp warp
> classic module
> giving some trouble.
>
> sincerely
>
> S.Jayashankar
> Research Student
> Institute for Biophysical Chemistry
> Hannover Medical School
> Germany.
>
>
> On Fri, Mar 5, 2010 at 7:40 PM, Victor Lamzin <[log in to unmask]>wrote:
>
>> Dear Madravi,
>>
>> Probably the buffer was not flashed out to the log file.
>>
>> Does the error stay if you run it from the command line,
>> $warpbin/auto_solvent.sh ?
>>
>> Best regards,
>> Victor
>>
>>
>>
>> Nalam, Madhavi wrote:
>>
>>> Hello:
>>> I am using CCP4i version 6.1.2
>>>
>>> I am trying to run the job ARP/wARP solvent building within CCP4. I used
>>> the default values for running the job. The log file after the run
>>> is pasted
>>> below.
>>>
>>> I looked in the file (sm14b_unique1_warp_solvent_last.log) for an error
>>> message but the file is empty. Can anyone suggest what/where I should be
>>> looking into?
>>> Thanks,
>>> Madhavi
>>> --------------------
>>> 5 ARP refinement cycles will be run in total
>>> Atoms will be removed if below 1.0 sigmas in 2mFoDFc map
>>> Atoms will be added if above 3.4 sigmas in mFoDFc map
>>>
>>> Refmac Refinement Parameters:
>>> 1 REFMAC cycle(s) in each ARP cycle
>>> Weight for restraints is set to AUTO
>>> Scaling protocol SIMPLE LSSC ANIS
>>> FreeR will be used for monitoring and sigmaa calculations
>>>
>>>
>>> QUITTING ... ARP/wARP module stopped with an error message:
>>> REFMAC5
>>>
>>> *** Look for error message in the file:
>>> sm14b_unique1_warp_solvent_last.log
>>>
>>> [1] 6836
>>>
>>> #CCP4I TERMINATION STATUS 1 #CCP4I TERMINATION TIME 05 Mar 2010 11:00:42
>>> #CCP4I TERMINATION OUTPUT_FILES
>>> /home/nalamm/angie/struc_soln/6_arp_warp_solvent.par angie
>>> #CCP4I MESSAGE Task completed successfully
>>>
>>>
>>>
>>
>
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