Hi.
I'm a little reluctant to get into this discussion, but I'm greatly confused by
it all, and I think much of my confusion comes from trying to understand one of Ian's assumptions.
Why are the scattering factors viewed as dimensionless quantities? In
the International Tables (for example, Table 6.1.1.1 in the blue books), the
scattering factors are given "in electrons". In the text for that section,
the scattering factors are obtained from an integral (over space) of the
electron density. So there's some consistency there between scattering factors
in units of electrons and electron density in electrons/(Angstrom**3). What's
gained at this point by dropping the word "electron" from all of these
dimensions?
Ron
On Sat, 27 Feb 2010, Ian Tickle wrote:
>> I'm not aware that anyone has suggested the notation "rho e/Å^3".
>
> I think you misunderstood my point, I certainly didn't mean to imply that
> anyone had suggested or used that notation, quite the opposite in fact. My
> point was that you said that you use the term 'electron density' to define
> two different things either at the same time or on different occasions, but
> that to resolve the ambiguity you use labels such as 'e/Å^3' or
> 'sigma/Å^3' attached to the values. My point was that if I needed to use
> these quantities in equations then the rules of algebra require that
> distinguishable symbols (e.g. rho and rho') be assigned, otherwise I would
> be forced into the highly undesirable situation of labelling the symbols
> with their units in the equations in the way you describe in order to
> distinguish them. Then in my 'Notation' section my definitions of rho &
> rho' would need to be different in some way, again in order to distinguish
> them: I could not simply call both of them 'electron density' as you appear
> to be doing.
>
> The question of whether your units of electron density are '1/Å^3' or
> 'e/Å^3' clearly comes down to definition, nothing more. If we can't agree
> on the definition then we are surely not going to agree on the units!
> Actually we don't need to agree on the definition: as long as I know what
> precisely your set of definitions is, I can make the appropriate adjustments
> to my units & you can do the same if you know my definitions; it just makes
> life so much easier if we can agree to use the same definitions! Again it
> comes down to the importance of having a 'Notation' section so everyone
> knows exactly what the definitions in use are. My definition of electron
> density is "number of electrons per unit volume" which I happen to find
> convenient and for which the appropriate units are '1/Å^3'. In order for
> your choice of units 'e/Å^3' to be appropriate then your definition would
> have to be "electric charge per unit volume", then you need to include the
> conversion factor 'e' (charge on the electron) in order to convert from my
> "number of electrons" to your "electric charge", otherwise your values will
> all be very small (around 10^-19 in SI units). I would prefer to call this
> quantity "electric charge density" since "electron density" to me implies
> "density of electrons" not "density of charge". I just happen to think that
> it's easier to avoid conversion factors unless they're essential.
>
> Exactly the same thing of course happens with the scattering factor: I'm
> using what I believe is the standard definition (i.e. the one given in
> International Tables), namely the ratio of scattered amplitude to that for a
> free electron which clearly must be unitless. So I would say 'f = 10' or
> whatever. I take it that you would say 'f = 10e'. Assuming that to be the
> case, then it means you must be using a different definition consistent with
> the inclusion of the conversion factor 'e', namely that the scattering
> factor is the equivalent point electric charge, i.e. the point charge that
> would scatter the same X-ray amplitude as the atom. I've not seen the
> scattering factor defined in that way before: it's somewhat more convoluted
> than the standard definition but still usable. The question remains of
> course - why would you not want to stick to the standard definitions?
>
> BTW I assume your 'sigma/Å^3' was a slip and you intended to write just
> 'sigma' since sigma(rho) must have the same units as rho (being its RMS
> value), i.e. 1/Å^3, so in your second kind of e.d. map rho/sigma(rho) is
> dimensionless (and therefore unitless). However since rho and sigma(rho)
> have identical units I don't see how their ratio rho/sigma(rho) can have
> units of 'sigma', as you seem to imply if I've understood correctly?
>
>> What I'm more concerned about is when you assign a numerical value to
>> a quantity. Take the equation E=MC^2. The equation is true
>> regardless
>> of how you measure your energy, mass, and speed. It is when you say
>> that M = 42 that it becomes important to unambiguously label 42 with
>> its units. It is when you are given a mass equal to 42 newtons, the
>> speed of light in furlongs/fortnight, and asked to calculate
>> the energy
>> in calories that you have to track your units carefully and
>> perform all
>> the proper conversions to calculate the number of calories.
>
> I can only agree with you there, but I never suggested or implied that a
> mass value (or speed or energy) should be given without the appropriate
> units specification, or that one should not take great care to track the
> units conversions.
>
>> Actually many equations in crystallography are not as friendly as
>> this one since they have conversion factors built into their standard
>> formulations. With the conversion factor built in you are then
>> restricted to use the units that were assumed. The example of this
>> that I usually use is the presence of the factor of 1/V in the Fourier
>> synthesis equation. It is there only because our convention is to
>> measure scattering in e/Unit Cell and electron density in e/Å^3. The
>> factor of 1/V is simply the conversion factor that changes
>> these units.
>
> I don't go along with you on that: the factor V is there simply because the
> definition of electron density we are using requires it, without it you get
> something other than the electron density as usually defined. Also without
> V in the equation you would not be able to compare electron density values
> for crystals with different values of V - a true apples & oranges situation!
> V is not a true unitless conversion factor like 'pi', 'radian', 'degree'
> etc, which are all constants: V is a variable and moreover it is not
> unitless so its value will depend both on the crystal and on the assumed
> units.
>
>> Mathematicians use the same units in reciprocal and real space and do
>> not have this term in their Fourier synthesis equation.
>
> I can only conclude that the mathematicians you are referring to work with
> idealised crystals whose unit cell volumes are always the same.
>
>> Since the conventional forms of the equations in our field often
>> have conversion factors built in (e.g. 1/V or 2 Pi radians/cycle),
>> we have to worry about the units of the variables in ways that pure
>> physics people usually don't.
>
> I don't see why we have to worry any less or more about units than the
> physicists: crystallography is essentially a branch of physics (the
> biologists contributing to this forum may disagree!), so I don't see why the
> problems of dealing with units should be any different.
>
>> When calculating structure factors from
>> coordinates we can't just say that "x" is the x coordinate of an atom,
>> we have to specify that this "x" is measured in fractional
>> coordinates.
>
> I can only re-iterate the importance of definitions. So in my notation
> section I might have:
>
> x : fractional co-ordinate of an atom (unitless),
> xo: orthogonal co-ordinate of an atom (Å units).
>
> Then I can use both 'x' (e.g. x = 0.1234) and 'xo' (e.g. xo = 1.234 Å) in
> the body of my paper without fear of ambiguity.
>
>>>in which case
>>>one needs to be careful to avoid ambiguous definitions.
>
>> Which is exactly what I've been advocating. I'm glad we
>> have reached agreement.
>
> Excellent! I take it then that henceforth you won't be using two
> incompatible definitions of electron density?
>
> Cheers
>
> -- Ian
>
>
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