Hi Yu
The results of probtrackx are binned in seed space. If you want your results to be binned in standard space, you can transform your seed into standard space and then feed the transformed seed and the transformation from standard to diffusion space to probtrackx.
Cheers,
Saad.
On 3 Feb 2010, at 13:27, huangpy py wrote:
> Dear experts
>
> It is said in the fsl tutorial that results from probtrackx can be binned in any available space, but I haven't seen any options for output in the gui (it has options for transforming the seed region). If I have to warp the results into standard space manually, which command should I use? In the FDT-registration, does it just produce the transformation .mat file?
>
> thanks
>
> Yu
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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