Hi,
It sounds like the linux one is doing the right thing.
So if you make the images match that and check with FSLView
then that is fine.
If the sform and qform are unknown then all of FSL assumes
a "radiological" orientation, and that is what fslorient reports.
All the best,
Mark
On 3 Feb 2010, at 17:44, Vishwadeep Ahluwalia wrote:
> Hi Mark,
> Thanks for the reply. I did not use a Vitamin E capsule but perhaps
> i'll do that henceforth to
> confirm. Meanwhile,since the linux version sets the sform and the
> MacPPC version doesnt,
> i manually set it to match that of the linux version using fslorient
> -setsformcode 1 epi.nii.gz
> I then checked the images in FSLVIEW on both machines and they look
> the same. This
> should be a confirmation that i've set the orientation
> correctly..right?
> just out of curiosity, when the sform, qform is unknown , does
> 'fslorient -getorient' assume
> that the image is Radiological?
> -Vish
>
|