JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for ALLSTAT Archives


ALLSTAT Archives

ALLSTAT Archives


allstat@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

ALLSTAT Home

ALLSTAT Home

ALLSTAT  January 2010

ALLSTAT January 2010

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Summary of responses to Question about a particular p-value

From:

Burke Johnson <[log in to unmask]>

Reply-To:

Burke Johnson <[log in to unmask]>

Date:

Tue, 12 Jan 2010 12:21:28 -0600

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (250 lines)

Hello List Members,
Thanks to all that replied to my query. There is not full agreement
about the "answer" to my question, but the reasoning is helpful.
Following are the answers...

Hello list members,

I have a question for you: Would you advocate "case 1" or "case 2"
below (or do you have a preferred  "case 3")?

Case 1.
If p is less than or equal to alpha, then reject null.
If p is greater than alpha, then fail to reject null.

Case 2. 
If p is less than alpha, then reject null.
If p is greater than or equal to alpha, then fail to reject null.

As you can see, for completeness I'm asking for your thoughts about the
highly unlikely (but possible) situation where p=alpha. 

For example, when using an alpha level of .05, what would you do in the
unlikely situation where the observed p-value is equal to .05 (i.e.,
alpha is set at .05 and the observed p=.05 to as many places as the
computer prints out). 

If you recommended case 1, I have a follow-up question about rounding:
What observed p-value would you consider close enough to be considered
"equal to .05" in the procedure? (The late Jacob Cohen offered a
convention that a p-value of .00 to .05 was sufficiently small, but
.051-1.00 was not sufficiently small to reject the null). 

Thanks in advance for your thoughts!

Burke Johnson

RESPONSES:

Burke, 
From a technical standpoint, with continuous variables Pr(P=(0.05))=0,
so it doesn't matter. In practice, if H0 is true, Pr(P=0.05) is a 
function of how many digits are displayed.  Most computers round rather
than truncate, so 0.0500, for example, could be anything between
and 0.04995 and 0.05004999999999999 barring a typo on my part.  It also
means that 0.0499 is less than 0.04995. I would follow whatever
prescription was stated in the protocol, which is typically that
P<0.05.  If someone wanted to call P=0.0500 statistically significant, I
would be
inclined to let him/her have his/her say depending on the consequences.
 What makes me angry is when I see someone round 0.05499 to 0.05
and try to claim P<0.05.
--Jerry.

Burke, 
Case 1 is your answer. The rounding off scheme is arbitrary. How about
0.0500000001?  Where do you round off. A similar scenario is if you
construct a 95% CI versus 94% CI and the decisions are different, what
we do then? Once you decide or obtain, you have to stay with it...
Regards,
--Satya Mishra


Burke,
In some sense you question is of little import. I don't mean to
denigrate you, or your thought process by saying this, but we must
remember that there is nothing "magical" about a p<0.05. There is no
science behind the choice of 0.05 as indicating significance as compared
to any other value. What is the difference between a p<0.04 which we say
is significant and one that is <0.06 which we say is not significant?
They both differ form the magical 0.05 by 0.01! The choice of 0.05 comes
from R.A. Fisher who pulled the value out of the air. It is, I believe
far better to give the effect size along with a measure its precision
(i.e. the SE) and a p value, or perhaps better the effect and a 95%
confidence interval around the effect without getting tied into knots
determining what is statistically significant and what is not. It is all
to easy to fall into the trap of saying that one will pay attention to a
test associated with a p<0.05 (or <=0.05) and ignore results with any
larger p value. 
We must also remember statistical significance does not mean a result
is important, and conversely.
--John David Sorkin M.D., Ph.D.


John (and others?), 
Please do not assume too much from my post. I am aware of and have
positions about everything you mentioned in your post (and, BTW, I agree
with what you said). I recently got into a debate about the specific
issue in my post, with a relatively well known quantitative methods
professor in psychology/education, and I wanted to see if any of you
agreed with his position (and, if so, to hear the reasons). For many
years I have been teaching Case 1, in conjunction with the
qualifications you mentioned, and many more. I also thought it might be
interesting to discuss the issues a little, again. For example, I would
argue that it is important to have a starting point case (case 1, case
2, or a case 3), when teaching NHST in introductory statistics classes.
Then, by adding and discussing the other related issues, we try to help
them learn to conduct thoughtful/reasonable statistical practice. I
believe that the social/behavioral/health sciences would have developed
more quickly if effect sizes and effect confidence intervals had been
used for the past 75 years. We still will get to where we want, but it
is going to take longer. For example, the APA Publication Manual, which
is used by multiple disciplines, has made some (perhaps not enough)
improvements on statistical practice and reporting, but many journals
are lagging behind.  
Cheers,
--Burke


Burke,
The technicality is that if p=alpha you fail to reject the null, but as
John Sorkin pointed out this has elements of farce about it.  It is like
saying that your cholesterol should be below 5.0, so if it is 4.999 you
are in perfect health, but if it is 5.000 you should start making
funeral arrangements.
Hope this helps
--Paul Wilson

Dear Burke
I would not consider p=0.05. I would calculate the exact p and them
think 
about my problem. 
Basilio de Bragança Pereira

Burke, 
Might be worth looking at: Gigerenzer, G. (2004) Mindless Statistics.
The Journal of
Socio-Economics, 33, , 587-606.
http://library.mpib-berlin.mpg.de/ft/gg/GG_Mindless_2004.pdf 
Regards .. Paul Barrett

Hello Burke .. thanks .. there was a chapter by Gerd and colleagues on
the same theme in: Gigerenzer, G., Krauss, S., and Vitouch, O. (2004)
The Null Ritual: What
you always wanted to know about significance tests but were afraid to
ask. In David Kaplan (ed.) The Sage Handbook of Quantitative
Methodology
for the Social Sciences, Chapter 21, pp. 391-408. Thousand Oaks: Sage
Publications. ISBN:0-7619-2359-4.
Some additional arguments are in there.
--Regards .. Paul

Burke,
Definition of p-value:  The smallest level of significance at which the
null
hypothesis can be rejected (below this we cannot).

So, if p-value= 0.032,

* Reject Ho at alpha.>= 0.032 (because you can still reject at 0.032),
and
** Do not reject Ho at .03199....

I say and preach this in my classes, however, I just saw the following
in
the textbook that we use for our ST 210,

"Reject Ho if alpha >p-value, and do not reject otherwise."

[Introductory Statistics by Prem Mann, John Wiley and Sons 2007, sixth
edition, page 388]

As alpha=p-value is a low probability item,  generally, a lot of people
play around with including or excluding alpha=p-value in Case 1.
However, the definition clearly states that as long as alpha does not
fall below the computed p-value, we would be safe in deciding  "reject
of Ho."

Actually, including alpha=p-value amounts to smaller beta value and
hence larger power.

Now, there is a whole lot of discussion on "whether to compute  p-value
first, then compare it with the given alpha or jut stay with p-value
alone."
It is a philosophical discussion and generally both sides claim
victory. Father of modern statistics, RA Fisher (of Cambridge, UK)
preached for p-value approach and another top-ranked statistician, Jerzy
Neyman of UC Berkeley [of Neyman-Pearson Lemma (1929) fame] preached
testing using the fixed alpha approach. While it is easier to explain to
students "testing with fixed alpha approach (due to cumbersomeness  of
manual computations of the p-value) using standard recipes;" the easy
access to p-value computation using various software has reduced the
problem to interpretation of the results.

Satya Mishra

Burke,
Though I agree with almost everything in the responses you got (of
course only those that copied the list), I had the feeling that no one
gave a direct answer to your question. In short prose, theory tells me
that the significance level is the probability to reject H0 if it is
true. This is warranted in case 1: if you reject H0 whenever your p
value is truly equal to 5%, the significance level is 5% and you are
fine. Now, if you use case 2, your true significance level MAY turn
out
to be smaller than 5%. Assuming a test statistic which has a
continuous
distribution, it is not TRULY smaller than 5% -- whatever smaller
significance level delta you would try, you could always find that it
cannot be the true significance level, as there is a p value > delta
but
smaller than 5%. So the true significance level is 5%, but you require
some kind of asymptotic, which you do not for case 1. So for me, it is
clearly case 1 already for ease.

Now, you can imagine examples where a p value of 5% is not only of
theoretical interest. This can occur if you have a discrete
distribution, and/or if you use a test statistic that follows a
discrete
distribution, or if you determine the null distribution by means of
re-randomizations (i.e. permutation tests). In the latter case,
imagine
a setting where you have 20 possible randomizations. Then, the one
yielding the largest test statistic would go with a p value of exactly
5% (in a one sided case). If you apply case 1, you'd have a chance to
reject H0, and you would do so whenever the test statistic is the
largest possible one. If you use case 2, you'd have no chance to
reject
H0, and then the power of the test would be 0 (!!!) no matter how big
the true effect. So it CAN indeed make a huge difference. 

Regarding your question on the required precision: I guess this is a
matter of taste. In theory, yes, you should determine the exact p
value,
but that's not always possible. Even less as your measurements are not
precise: If you assume a normal distribution of the residuals and
measure only 4 digits, then you loose some information. Formally, you
could try to determine the interval in which the p value will lie,
given
the precision of your measurement, and if the upper bound is below or
equal to 5%, you are fine, otherwise you cannot reject H0. For me it
sounds like a bad idea to rely on the 17th digit of the p value when
your measurements have only few digits. 

Back to practice: I agree with some posts that a p value of 5.1% tells
the same story as one of 4.9%, and that the levels are arbitrary.
Maybe
you want to look at the paper by Gelman and Stern in The American
Statistician 60 (2006) 328-331. But I am also aware that for some
people, this will make the difference between disappointment and
enthusiasm. And for those people, I prefer to use case 1, which has
slightly higher power in exceptional cases and will nevertheless allow
the same interpretation of the significance level. 
--HTH, Michael

You may leave the list at any time by sending the command

SIGNOFF allstat

to [log in to unmask], leaving the subject line blank.

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

May 2024
April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003
2002
2001
2000
1999
1998


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager