Great. Thanks!
-MH
On Sat, 2009-11-07 at 08:33 +0000, Stephen Smith wrote:
> Hi - it's not a command-line option but is easily changeable if you're
> willing to recompile.
>
>
> cd $FSLDIR/src/randomise
>
>
> edit randomise.cc and change CLUST_CON from 26 to 18 or 6
>
>
> make randomise
>
>
> and then run the binary created in that source directory.
>
>
> Cheers.
>
>
>
>
>
>
>
> On 6 Nov 2009, at 20:18, Michael Harms wrote:
>
> > Hello,
> > Is there any way (perhaps a hidden flag?) to control the definition
> > of
> > connectivity for cluster-based thresholding (-c option) in
> > randomise?
> >
> > In particular, it appears that above threshold voxels touching at
> > any
> > vertex are considered part of the same cluster. Is it possible to
> > require that voxels have a common face touching in order to be
> > considered part of the same cluster?
> >
> > (The reason I ask is that I'm trying to relate the 'randomise'
> > permutation distribution to the output of some local software that
> > requires face connectivity for voxels to be considered part of the
> > same
> > cluster).
> >
> > thanks,
> > Mike H.
> >
> >
> > --
> > Michael Harms, Ph.D.
> > --------------------------------------------------------------------
> > Conte Center for the Neuroscience of Mental Disorders
> > Washington University School of Medicine
> > Department of Psychiatry, Box 8134
> > Renard Hospital, Room 6615 Tel: 314-747-6173
> > 660 South Euclid Ave. Fax: 314-747-2182
> > St. Louis, MO 63110 Email: [log in to unmask]
> > --------------------------------------------------------------------
> >
> >
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
>
>
>
>
>
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