Hi,
You can use the fslswapdim tool ( and fslorient if necessary ) to
change the orientation of your image.
Many Regards
Matthew
> Hello,
> I have an nii T1w volume with "PIR" orientation.
> i.e., using 'fslhd', I get:
>
> qform_xorient Anterior-to-Posterior
> qform_yorient Superior-to-Inferior
> qform_zorient Left-to-Right
>
> When I load this volume into 'fslview', the directions (R,L,A,P,S,I)
> are
> labeled correctly, but the display itself is sideways or upside down.
> e.g., the coronal view is displayed with the S -> I axis running
> left to
> right on the screen (sideways), and the sagittal view has the S -> I
> axis running from bottom to top (upside down).
>
> Is there a way to have 'fslview' display this volume in a conventional
> "radiological" display, or is it limited to displaying according to
> the
> ordering of the raw (i,j,k) data?
>
> thanks,
> Mike H.
>
>
> --
> Michael Harms, Ph.D.
> --------------------------------------------------------------------
> Conte Center for the Neuroscience of Mental Disorders
> Washington University School of Medicine
> Department of Psychiatry, Box 8134
> Renard Hospital, Room 6615 Tel: 314-747-6173
> 660 South Euclid Ave. Fax: 314-747-2182
> St. Louis, MO 63110 Email: [log in to unmask]
> --------------------------------------------------------------------
>
|