Christian - How long before you release the updated to Medlodic for double
regression?
On 11/9/09 6:29 PM, "Christian F. Beckmann" <[log in to unmask]> wrote:
> Hi Lucina,
>
> As chun suggested the best thing for you to do is to run melodic from the
> command line, that way none of the pre-processing steps will be performed.
> hth
> Christian
>
> On 9 Nov 2009, at 22:07, Lucina Uddin wrote:
>
>> Hi Chun,
>>
>> Thank you for your response. Yes, I was using the GUI. However, it seems
>> that one is not able to deselect 'standard space registration' for
>> multisession temporal concatenation (it seems that this option can only be
>> deselected for single-session ICA).
>>
>> Any thoughts on why standard-space registration is hard-wired for this form
>> of melodic, and whether there may be some other way around it?
>>
>>
>> Best,
>> Lucina
>>
>>
>>
>>
>> On Mon, 9 Nov 2009 00:10:37 +0800, Chun Meng <[log in to unmask]> wrote:
>>
>>> Hi, Lucina
>>>
>>> Did you run GUI-based processing? If so, typing in "Melodic", you can
>>> disable the button for standard space in registration to avoid repeated
>>> normalisation. Likewise, other optional processing could be shut down.
>>>
>>> Another better way is script-based processing in my experience. As you have
>>> normalised datasets, just type in "melodic", which gives tips.
>>>
>>> For example:
>>> melodic -i list_file_name.txt -o out_dir -m brain_mask --report --tr -a
>>> concat -d IC_number
>>>
>>> list_file_name.txt could be:
>>> $inpath/sub1.nii.gz
>>> $inpath/sub2.nii.gz
>>> ...
>>> Best
>>> --
>>> Chun Meng, Master candidate
>>> NeuroImage Computing group,
>>> National key Laboratory of Cognitive Neuroscience and Learning,
>>> http://psychbrain.bnu.edu.cn/en/index.htm,
>>> Beijing Normal University,
>>> Beijing 100875, China
>>> --
>>> I am focusing on brain mechanism and probe into it by fMRI, sMRI, DTI.
>>> I am interested in the related PhD program started in fall, 2010.
>>>
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