You can just open them directly in fslview - e.g.
fslview ${FSLDIR}/data/atlases/HarvardOxford/HarvardOxford-cort-
prob-2mm.nii.gz
will display the 2mm cortical atlas..
Many Regards
Matthew
> Hello,
>
> Can anyone tell me if there is a way to display the Harvard-Oxford
> Cortical
> and Subcortical Structural atlases without using the atlas toolbar
> in FSLView?
>
> Right now I'm trying to find a way to decode the xml files in
> $FSLDir/data/atlases and produce a color-coded volume of the brain
> using
> ImageJ. I'm not sure if this is possible yet.
>
> Thank you in advance!
>
> Thao
>
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